Protein Info for IAI46_14745 in Serratia liquefaciens MT49

Annotation: lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 187 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF07273: DUF1439" amino acids 29 to 179 (151 residues), 182.6 bits, see alignment E=2.2e-58

Best Hits

Swiss-Prot: 66% identical to YCEB_SHIFL: Uncharacterized lipoprotein YceB (yceB) from Shigella flexneri

KEGG orthology group: None (inferred from 98% identity to spe:Spro_2800)

Predicted SEED Role

"Putative lipoprotein yceB precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (187 amino acids)

>IAI46_14745 lipoprotein (Serratia liquefaciens MT49)
MKKILMGAAALLFAGALVGCNQLTQYTLSEQEVNDYLQKHNDYQKQIGVPGLLDANIVLT
QLKSQIGRSEPGKVTLSGDAKVNITSILGPQTADLKLTLKAQPVYDREQGAVFLKDMELT
DYSVQPEKMQTVMKALTPYLNQSLKSYFDQKPAYVLNPDNSKTEAMAKKLAKGLEVKPGE
LVIPFTD