Protein Info for IAI46_14425 in Serratia liquefaciens MT49
Annotation: ABC transporter ATP-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein (inferred from 77% identity to srs:SerAS12_2774)Predicted SEED Role
"Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (269 amino acids)
>IAI46_14425 ABC transporter ATP-binding protein (Serratia liquefaciens MT49) MESQTPPLLTVEHLTLSLNAEVKVHDLSFTLHAGERLCLLGASGSGKSLTAAAILGTLPV GATVSGSIRLQGREVNGLRLQRRKNTELAAIFQDPFTSLNPLTTVGQQLTLALRSQNPLT KCQAQHCAAELLTALGMSPDNVMTRYPNQLSGGQCQRICAALALLGEKSLLIADEPTTAL DMVSQHQLIDILKSYTERPSAPALLFITHDLAVAAGLCQRAIVLVNGEIAEQGSFGRLLQ PPQHPYTQQLVASAQRPAFNRPPSLSLAG