Protein Info for IAI46_14400 in Serratia liquefaciens MT49

Annotation: YqaE/Pmp3 family membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 52 transmembrane" amino acids 24 to 48 (25 residues), see Phobius details PF01679: Pmp3" amino acids 3 to 48 (46 residues), 69.2 bits, see alignment E=1.2e-23

Best Hits

Swiss-Prot: 77% identical to YQAE_ECOL6: UPF0057 membrane protein YqaE (yqaE) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: None (inferred from 96% identity to srr:SerAS9_2768)

Predicted SEED Role

"FIG00638334: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (52 amino acids)

>IAI46_14400 YqaE/Pmp3 family membrane protein (Serratia liquefaciens MT49)
MSFWRIVFTIILPPLGVLLDKGIGGAFILNIILTLFGYFPGLIHAFWIQTKQ