Protein Info for IAI46_14365 in Serratia liquefaciens MT49

Annotation: MipA/OmpV family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 234 PF06629: MipA" amino acids 14 to 234 (221 residues), 187.8 bits, see alignment E=1.6e-59

Best Hits

Swiss-Prot: 56% identical to MIPA_SHIFL: MltA-interacting protein (mipA) from Shigella flexneri

KEGG orthology group: K07274, outer membrane protein (inferred from 91% identity to spe:Spro_2730)

MetaCyc: 56% identical to MltA-interacting protein (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"MltA-interacting protein MipA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (234 amino acids)

>IAI46_14365 MipA/OmpV family protein (Serratia liquefaciens MT49)
MVCAQSAQAGTWSLGASALVSPDPYRGYQDRVYPVPVINYEGDDFYFRTLTAGYYLWKDQ
ENQLSLMGYYSPLGYRPGDSDDDRMKKLDKRRGTLMAGLAYTHNADWGILRTTFTGDTLD
YSNGMIGDFAYLYKFELDAFTLVPGVGVTWSSKNQNKYYYGVSDNESRRSGLDSYTPSDS
WAPYVELSANYKINKDWNAFFMGRYIKLSDEVKDSPMVDKSYTGVLMTGVSYSF