Protein Info for IAI46_14065 in Serratia liquefaciens MT49

Annotation: UPF0259 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 84 to 110 (27 residues), see Phobius details amino acids 131 to 167 (37 residues), see Phobius details amino acids 190 to 212 (23 residues), see Phobius details amino acids 222 to 244 (23 residues), see Phobius details PF06790: UPF0259" amino acids 1 to 247 (247 residues), 309.9 bits, see alignment E=8.3e-97

Best Hits

Swiss-Prot: 97% identical to Y2675_SERP5: UPF0259 membrane protein Spro_2675 (Spro_2675) from Serratia proteamaculans (strain 568)

KEGG orthology group: None (inferred from 97% identity to spe:Spro_2675)

Predicted SEED Role

"Membrane protein YciC, linked to IspA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (250 amino acids)

>IAI46_14065 UPF0259 family protein (Serratia liquefaciens MT49)
MPITANTLYRDSFNFFRNQLASILILALLTAFISVLLNQVFSPDIEQLKILSATEGDFAA
SAGMGIQEIIQQMTPEQQMVLLKVSAAATFSALVGNVLLVGGMLTLVRLVSQGQRLSALR
AIGASAPELPRLLLLLFICTLLIQLGLTLFVVPGVIMAIAFSLAPVITTADKKGVFASIK
LSCKLAFANARVIVPAMMLWLAAKLLVLFMVSHLSVLTPNVASVVLTALSNLVSALLLIY
LFRLYMLLRS