Protein Info for IAI46_13130 in Serratia liquefaciens MT49

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 transmembrane" amino acids 281 to 303 (23 residues), see Phobius details amino acids 315 to 336 (22 residues), see Phobius details PF01544: CorA" amino acids 52 to 333 (282 residues), 171.2 bits, see alignment E=1.7e-54

Best Hits

KEGG orthology group: K03284, metal ion transporter, MIT family (inferred from 96% identity to srs:SerAS12_2563)

Predicted SEED Role

"Magnesium and cobalt transport protein CorA" in subsystem Campylobacter Iron Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (342 amino acids)

>IAI46_13130 transporter (Serratia liquefaciens MT49)
MAQTVAEKLHKLDFDDEVTGLIYGHVFRTSEPPQRVSSQQACQAYQTLSPGEGFIWLHLN
LNHAAAEKWLKNHFEISEFFFDEIRHGSHTTRIERQGEDLFAVLNDVIFHPKENNPEIAT
LWLYCRSGLVVTVRHKPLRLIERLLGRLGPLQLASSTELLAHLLEEQEEVLEQVVRQANQ
YVDTIEDRLLSNHVKRNRTELGRMRRMLLRFQRLLAPEPAALFRLLNRPPTWLSRDVVQD
LRQFTEEFTVVLNDLASLTERIRLLQEEIGAKQMEQNNRTLYTLTVITVLALPINIVAGF
FGMNVGGIPLASNHHGFVLLVLLVGGFTLVTGYLAFRRRDEG