Protein Info for IAI46_11920 in Serratia liquefaciens MT49

Annotation: chromate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 89 to 111 (23 residues), see Phobius details amino acids 119 to 138 (20 residues), see Phobius details amino acids 149 to 165 (17 residues), see Phobius details amino acids 170 to 186 (17 residues), see Phobius details PF02417: Chromate_transp" amino acids 20 to 177 (158 residues), 119.4 bits, see alignment E=8.7e-39

Best Hits

KEGG orthology group: K07240, chromate transporter (inferred from 93% identity to spe:Spro_2327)

Predicted SEED Role

"Chromate transport protein ChrA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (190 amino acids)

>IAI46_11920 chromate transporter (Serratia liquefaciens MT49)
MSESDAVKNDPQAAPPGNGELFLGFLMLGLIGFGGVLPLARNMLVEDRRWLSGQQFTELL
GLCQFLPGGNVINLSVAVGMEFRGLRGAFCALLGLISAPTAIVVGLGMVYARFQNDAHVQ
HVFAGLAAAAAGLLLSTGVKMLLPLRGKWLALGIVALCLIAIAWLRLPLLPTMLTLAPLS
ILLMWWRDRS