Protein Info for IAI46_11325 in Serratia liquefaciens MT49

Annotation: FUSC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 677 transmembrane" amino acids 23 to 41 (19 residues), see Phobius details amino acids 47 to 65 (19 residues), see Phobius details amino acids 72 to 88 (17 residues), see Phobius details amino acids 94 to 111 (18 residues), see Phobius details amino acids 118 to 137 (20 residues), see Phobius details amino acids 149 to 171 (23 residues), see Phobius details amino acids 360 to 379 (20 residues), see Phobius details amino acids 385 to 401 (17 residues), see Phobius details amino acids 413 to 432 (20 residues), see Phobius details amino acids 438 to 455 (18 residues), see Phobius details amino acids 462 to 480 (19 residues), see Phobius details amino acids 494 to 512 (19 residues), see Phobius details PF04632: FUSC" amino acids 20 to 663 (644 residues), 596.1 bits, see alignment E=1.1e-182 PF13515: FUSC_2" amino acids 34 to 163 (130 residues), 58.3 bits, see alignment E=9.2e-20

Best Hits

Swiss-Prot: 64% identical to YDHK_SALTY: Uncharacterized transporter YdhK (ydhK) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: None (inferred from 95% identity to spe:Spro_2211)

Predicted SEED Role

"FIG01055514: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (677 amino acids)

>IAI46_11325 FUSC family protein (Serratia liquefaciens MT49)
MNLPFLEWKRTPWGKATGGQWRYALRNSLAMCLSLWVAFVLNLDEPYWALTSAAVVSFPT
VGGVISKSIGRVFGSLVGAAASVAIAGHCLNDPWLFTLFIAAWIGLCTYISNHYQNNVSY
AFALAGYTAAIIAFSTVNVTDTQQIFDIAQARVCEVITGILCGGLMMMILPSTSDGETLL
TSLRRMHLRLLEHAAMLWQPEITVQMRTSHEGVIGQILTMNLLRIQAFWSHYRLRRQNNL
LNYMLHQQLRITSVISSLRRMLLNWPDRPANLASVLEQLLTELRNPETDKYRLARILQQI
APQDPADYRHRAFWLRLRHFCWLYLSASRWLQRLESATPVSDIQPPRVTSLARHTDSYEA
AYNGLRTFLCIVIGCAYWINTQWDAGSSALTLIAISCVLYSSTPSPINSITTLLKAVLLL
SIVCFVVKFGLMIQIDDFWLFCAFLFPVLVTMQMIKLQHPSYAALWGQLIVFMGSFLSVT
NPPSYDYQSFINDSIGKIVGVLLAGLAFQILRPSSDKRKSRRIIRALRRDFIDQLSKKPQ
QNESQFESRIYHRISQLNQSQDQEARSWLLRWGVVLLNCSHIVWQLRDWQTRSDPLSAVR
DVCIHCLRGIMTEKGVQHSSLDASLQELQRMSTALAHHPEQAARDLAGLIWRLYCSLQQL
QQAIVPVDSAATTSTAR