Protein Info for IAI46_11035 in Serratia liquefaciens MT49

Annotation: lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 554 transmembrane" amino acids 7 to 26 (20 residues), see Phobius details amino acids 84 to 107 (24 residues), see Phobius details amino acids 117 to 146 (30 residues), see Phobius details amino acids 167 to 194 (28 residues), see Phobius details amino acids 206 to 228 (23 residues), see Phobius details amino acids 259 to 282 (24 residues), see Phobius details amino acids 294 to 311 (18 residues), see Phobius details amino acids 317 to 337 (21 residues), see Phobius details amino acids 350 to 371 (22 residues), see Phobius details amino acids 384 to 404 (21 residues), see Phobius details amino acids 411 to 430 (20 residues), see Phobius details PF02366: PMT" amino acids 10 to 239 (230 residues), 138.7 bits, see alignment E=2.5e-44 PF13231: PMT_2" amino acids 63 to 224 (162 residues), 46.1 bits, see alignment E=6.8e-16

Best Hits

Swiss-Prot: 91% identical to ARNT_SERP5: Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase (arnT) from Serratia proteamaculans (strain 568)

KEGG orthology group: K07264, 4-amino-4-deoxy-L-arabinose transferase [EC: 2.-.-.-] (inferred from 91% identity to spe:Spro_2158)

Predicted SEED Role

"Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB"

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.-.-.-

Use Curated BLAST to search for 2.-.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (554 amino acids)

>IAI46_11035 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase (Serratia liquefaciens MT49)
MKALKGSWAIVLAIFFALVYLIPLNGRLLWQPDETRYAEISREMLQRGDWVVPHLLGLRY
FEKPVAGYWFNNISQWLFGDTNFAVRFGSVFSTGMTAVLVFALAMLMWRNARRASLATLI
FLSMVLVFSIGTYSVLDPMISLWLVAAMVSYYLTLKATTVKGKVGGYVLLGLACGMGFMT
KGFLALAVPVIAVIPIVIQQRRIKDLLIYGPLAILTAVLLSLPWALAIAQREPDFWNYFF
WVEHIQRFAEDNAQHKAPFWYYIPILMAAVLPWLALLPGSLLKGWRERVQRPELFFLLSW
VMMPLIFFSIAKGKLPTYILPCMAPLALLMAAYAEDYAASLRSKTFKINALLNGLFGLIC
VVALLVLGSGLLPKVKLFGAQEWPKIVIGIIMFGGWLFFAIVSARNNAQRWRWAAACPLL
LCLLVGYAIPQQVTDSKLPQNFISVNMAQLGHSRYVLTDSAGVAAGLAWELKRSDVLMFS
EKGEVAYGLAYPDSRSHFISDADFPQWLAQARKQGDVSLVLQLSRGDHVPQNLPAADKVV
EMNRLALLWYQQQP