Protein Info for IAI46_10740 in Serratia liquefaciens MT49

Annotation: spore coat protein U domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF05229: SCPU" amino acids 16 to 153 (138 residues), 59.4 bits, see alignment E=2.5e-20 amino acids 179 to 304 (126 residues), 88.9 bits, see alignment E=1.9e-29

Best Hits

KEGG orthology group: None (inferred from 93% identity to spe:Spro_2107)

Predicted SEED Role

"Sigma-fimbriae tip adhesin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (310 amino acids)

>IAI46_10740 spore coat protein U domain-containing protein (Serratia liquefaciens MT49)
MIRGTKALLLALLLLTASQALADCTTTNGTVTLPGSSSFAVYNGSLSAQGTAGLNCSGLG
LSLLTQNTVTVKINSTTHNMALANTDGSGDQIPYLIYPDANYQYPYSVGQTIDYSSLNLL
TLILISPNVNFPLYIKTTAGANVRAGTYTDTVNLVWNYHICGLGLIGLCIWWDGTNKPST
VNISLTITKDCLLGTAQNVNFGSMALVGQFNAVNQSITLTCTKTEGYNTYFTDGNNPVTG
WRRMKSGTSNYLQYQIYLPNTTTVWNSANKQAGSGTGLAQSIPYLAQINQAQTEVPVGTY
QDNLSFVVEY