Protein Info for IAI46_10330 in Serratia liquefaciens MT49

Annotation: PAS domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 PF08348: PAS_6" amino acids 12 to 121 (110 residues), 115 bits, see alignment E=1.7e-37 PF13309: HTH_22" amino acids 148 to 209 (62 residues), 61.9 bits, see alignment E=4.6e-21

Best Hits

KEGG orthology group: None (inferred from 91% identity to spe:Spro_2000)

Predicted SEED Role

"YheO-like PAS domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (213 amino acids)

>IAI46_10330 PAS domain-containing protein (Serratia liquefaciens MT49)
MGDLRQENALLLREAEKIVQALGAMFAPSCEVVLHDLTQPNHAIVSIANNLSNRNIGDAA
SEMGLERIASPEFPDVVQNYANAFPDGRPAKSTSIGLRNSQGVYVAAICINLDVSIFNSV
NAILQQLTAVVQSTPQAADEGARSLSDIASVINNFAASHATAPRALTSEQRVQVIQQLKQ
QGYLQLRGAATMAAEALGISRVSVYNLLKRDAG