Protein Info for IAI46_09725 in Serratia liquefaciens MT49

Annotation: biofilm formation regulator BssS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 84 PF13991: BssS" amino acids 11 to 79 (69 residues), 113.7 bits, see alignment E=1.8e-37

Best Hits

Swiss-Prot: 66% identical to BSSS_ECOL6: Biofilm regulator BssS (bssS) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K12148, biofilm regulator BssS (inferred from 96% identity to spe:Spro_1893)

Predicted SEED Role

"FIG074102: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (84 amino acids)

>IAI46_09725 biofilm formation regulator BssS (Serratia liquefaciens MT49)
MDRNDEVIQTHPLVGWDISTVDVYDAMMIRLHYLSSLDQTPEDAQVDRTLWLTTDVARQL
INILEAGIAKIEATDYQDLDRRKH