Protein Info for IAI46_09680 in Serratia liquefaciens MT49

Annotation: NADH:flavin oxidoreductase/NADH oxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 PF00724: Oxidored_FMN" amino acids 3 to 339 (337 residues), 230.7 bits, see alignment E=3.1e-72 PF01207: Dus" amino acids 190 to 341 (152 residues), 23.9 bits, see alignment E=2.2e-09

Best Hits

KEGG orthology group: None (inferred from 88% identity to srr:SerAS9_1831)

Predicted SEED Role

"NADH:flavin oxidoreductases, Old Yellow Enzyme family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (365 amino acids)

>IAI46_09680 NADH:flavin oxidoreductase/NADH oxidase (Serratia liquefaciens MT49)
MSQLFTPITLGKLSLPNRIVIAPMCQYSADNGKATEWHTMHLGHLALSGAGLLIVEATSV
APEGRITPNDLGLWDDATEQALAEVIQAVRKHATLPLGIQLGHAGRKASCAVPWAGGGQL
NRADGGWQTLSASDIPFTQHDASPAAMSLEQIEQLKAQFVTAAKRADRLGFELIELHGAH
GYLLHQFLSPLSNQRNDQYGGSLQNRMRLLLEIYNEVRAVFPAQKALGVRISASDWVEGG
WDEQQSVALAKALKELGCDYIHVSSGGLSPLQKIPVGPNYQVPFAETIKRESGLPTIAVG
LITEPEQAEAIVATGQADMVALARGILYNPRWPWHAAAKLGEKVSAPPQYWRSEPHVLKG
LFKND