Protein Info for IAI46_09645 in Serratia liquefaciens MT49

Annotation: YeeE/YedE family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 144 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 53 to 72 (20 residues), see Phobius details amino acids 84 to 101 (18 residues), see Phobius details amino acids 121 to 139 (19 residues), see Phobius details PF04143: Sulf_transp" amino acids 15 to 133 (119 residues), 30.3 bits, see alignment E=1.6e-11

Best Hits

Swiss-Prot: 50% identical to Y1892_XYLFT: UPF0394 membrane protein PD_1892 (PD_1892) from Xylella fastidiosa (strain Temecula1 / ATCC 700964)

KEGG orthology group: None (inferred from 85% identity to srr:SerAS9_1823)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (144 amino acids)

>IAI46_09645 YeeE/YedE family protein (Serratia liquefaciens MT49)
MTVDWLHFTPLSALVGGGIIGSAVALLLLFNGRIAGISGITGGLLTPQGKEKGWRAAFLV
GLLISPWLYRIARPLPDMPVNGSSLWLIAAGILVGLGTRLGGGCTSGHGVCGVARLSPRS
LVATAVFMLLGFITVWAVRQWGGV