Protein Info for IAI46_09060 in Serratia liquefaciens MT49

Annotation: D-serine/D-alanine/glycine transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 transmembrane" amino acids 28 to 45 (18 residues), see Phobius details amino acids 52 to 73 (22 residues), see Phobius details amino acids 105 to 129 (25 residues), see Phobius details amino acids 135 to 154 (20 residues), see Phobius details amino acids 164 to 187 (24 residues), see Phobius details amino acids 211 to 232 (22 residues), see Phobius details amino acids 252 to 274 (23 residues), see Phobius details amino acids 286 to 308 (23 residues), see Phobius details amino acids 344 to 365 (22 residues), see Phobius details amino acids 371 to 397 (27 residues), see Phobius details amino acids 417 to 435 (19 residues), see Phobius details amino acids 441 to 460 (20 residues), see Phobius details PF00324: AA_permease" amino acids 27 to 464 (438 residues), 427.8 bits, see alignment E=5.1e-132 PF13520: AA_permease_2" amino acids 31 to 448 (418 residues), 146.1 bits, see alignment E=1.6e-46

Best Hits

Swiss-Prot: 86% identical to CYCA_ECOL6: D-serine/D-alanine/glycine transporter (cycA) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: None (inferred from 98% identity to srr:SerAS9_1770)

MetaCyc: 86% identical to D-serine/alanine/glycine:H+symporter (Escherichia coli K-12 substr. MG1655)
RXN0-5130; RXN0-5201; RXN0-5202; RXN0-5203; TRANS-RXN-62A; TRANS-RXN-62B

Predicted SEED Role

"D-serine/D-alanine/glycine transporter" in subsystem Glycine and Serine Utilization or Pyruvate Alanine Serine Interconversions

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (466 amino acids)

>IAI46_09060 D-serine/D-alanine/glycine transporter (Serratia liquefaciens MT49)
MVDHSKIATDTAPASEDHLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVY
MIIGFMLFFVMRAMGELLLSNLEYKSFSDFAADLLGPWAGFFTGWTYWFCWVVTGIADVV
AITAYAQFWFPGLSQWIASLLCVLLLLGLNLATVKMFGEMEFWFAMIKIVAIVGLIVAGL
VMIAMQFQSPTGTVASFSHLWNDGGMFPKGISGFFAGFQIAVFAFVGIELVGTTAAETKD
PEKVLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVADKSPFVELFVLIGLPAAASVIN
FVVLTSAASSANSGVFSTSRMLFGLAQEGDAPKSFANLSKRAVPANGLTFSCICLLGGVV
LIYLIPNVMTVFTLVTTVSAILFMFVWTIILCSYLVYRKKRPALHQKSIYKMPAGKLMCW
VCMAFFVFVLVLLTLRDDTRQALIVTPLWFVILGLSYVFLRKKKAA