Protein Info for IAI46_09000 in Serratia liquefaciens MT49

Annotation: LysE family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 37 to 60 (24 residues), see Phobius details amino acids 67 to 87 (21 residues), see Phobius details amino acids 147 to 171 (25 residues), see Phobius details amino acids 186 to 204 (19 residues), see Phobius details PF01810: LysE" amino acids 14 to 202 (189 residues), 122.9 bits, see alignment E=5.9e-40

Best Hits

KEGG orthology group: None (inferred from 88% identity to spe:Spro_1814)

Predicted SEED Role

"Threonine efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (205 amino acids)

>IAI46_09000 LysE family transporter (Serratia liquefaciens MT49)
MTELIAVVTITLLAVISPGPDFAMVSRNSLLLSRRAGVVTACGIGAGVLIHVSYTLIGVG
VLIQQSLWLFTLLKMIGAAYLIYLGISMLRSAGAATVSAGATPTAASDFAALKTGFLTNA
LNPKTTIFVVSLFMQVVNPHTSLAVQIGYGLFIALAHILWFSAVALLFSAPGINARLLRL
RKGIDRVFGGLLIAFGALLAIAGMR