Protein Info for IAI46_08945 in Serratia liquefaciens MT49

Annotation: FtsH protease modulator YccA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 219 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 47 to 65 (19 residues), see Phobius details amino acids 75 to 98 (24 residues), see Phobius details amino acids 105 to 125 (21 residues), see Phobius details amino acids 133 to 154 (22 residues), see Phobius details amino acids 160 to 178 (19 residues), see Phobius details amino acids 193 to 216 (24 residues), see Phobius details PF01027: Bax1-I" amino acids 19 to 213 (195 residues), 154.3 bits, see alignment E=1.9e-49

Best Hits

Swiss-Prot: 78% identical to YCCA_ECOLI: Modulator of FtsH protease YccA (yccA) from Escherichia coli (strain K12)

KEGG orthology group: K06890, (no description) (inferred from 100% identity to spe:Spro_1767)

Predicted SEED Role

"Putative TEGT family carrier/transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (219 amino acids)

>IAI46_08945 FtsH protease modulator YccA (Serratia liquefaciens MT49)
MDRIVVSSSSRDSLLSTHKVLRNTYFLLSLTLAFSALTATASTMLGLPAPGLLLMLVGFY
GLMFLTHKLANSPAGILAAFALTGFMGYALGPILSSFINTGAGDLIMLALGGTAVVFFCC
SAYVLTTRKDMSFLSGMMMAGFVVLLVAVIANLFLQIPALHLAISALFILFSAGAILWET
SNIIHGGETNYIRATVSLYVSLYNMFISLLSILGFARSN