Protein Info for IAI46_08755 in Serratia liquefaciens MT49
Annotation: porin OmpC
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 88% identical to OMPF_SERMA: Outer membrane protein F (ompF) from Serratia marcescens
KEGG orthology group: None (inferred from 96% identity to srs:SerAS12_1701)MetaCyc: 75% identical to outer membrane porin N (Escherichia coli K-12 substr. MG1655)
RXN0-2481
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (368 amino acids)
>IAI46_08755 porin OmpC (Serratia liquefaciens MT49) MKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDGLHYFSDDKGNDGDQTYVRFG FKGETQITDQLTGYGQWEYNVQANHDEAQGTEGTKTRLGFAGLKFADYGSFDYGRNYGVL YDVEGWTDMLPEFGGDTYTYTDNFMTGRTNGVATYRNNNFFGLVDGLNFAVQYQGKNEND GRALKKQNGDGWGLSSTYDIGEGVSFGAAYASSDRTDKQTNNSTAGGDKADAWTVGAKYD ANNVYLAAMYSETRNMTPYGDFDAGIANKTQNFEVTAQYQFDFGLRPEVSYLQSKGKNLA GHTNHGSSFSGGDADLVKYVSVGTTYYFNKNMSTYVDYKINLLDDNEFTKATGTATDDIV GVGLVYQF