Protein Info for IAI46_08560 in Serratia liquefaciens MT49

Annotation: DNA translocase FtsK 4TM domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1191 transmembrane" amino acids 22 to 43 (22 residues), see Phobius details amino acids 75 to 98 (24 residues), see Phobius details amino acids 109 to 131 (23 residues), see Phobius details amino acids 137 to 158 (22 residues), see Phobius details amino acids 165 to 185 (21 residues), see Phobius details PF13491: FtsK_4TM" amino acids 20 to 191 (172 residues), 156.8 bits, see alignment E=8.7e-50 PF17854: FtsK_alpha" amino acids 700 to 800 (101 residues), 99.6 bits, see alignment E=2.1e-32 PF01580: FtsK_SpoIIIE" amino acids 808 to 1021 (214 residues), 280.6 bits, see alignment E=1.7e-87 PF09397: FtsK_gamma" amino acids 1126 to 1186 (61 residues), 96.8 bits, see alignment 1e-31

Best Hits

Predicted SEED Role

"Cell division protein FtsK" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton or Bacterial RNA-metabolizing Zn-dependent hydrolases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1191 amino acids)

>IAI46_08560 DNA translocase FtsK 4TM domain-containing protein (Serratia liquefaciens MT49)
MSQEYTEDKEVTLRKLSSGRRLLEAVLIVVAIFAIYLMAALVSFNPSDPSWSQTAWHEPI
HNLGGGVGAWLADTLFFTFGVLAYAIPPIMLVLCWAAYRQRGSGEYIDYFALSLRLIGTL
ALVLTSCGLAALNVDDLYYFASGGVIGSLLSNAMLPWFNGIGATLALLCVWAAGLTLFTG
WSWLVIAERIGGVVLGTATFMTNRSRRDERYHDDDDRYVEDQPESAEKGAALAAASTAAV
ANAAEDDVLFSAPSVTETAKMAAEEAEDPLLSGLRANDDEDADVAPVAPAVAREPVTAAP
VVAQAPSVTVAPTAPASVNQSPMSTPAENSAPPLYSFEIPEETPTPKVTRPADPYQDDDE
PRMGNWDAPATSPSHDRSPFDFSAAQRDSADITAPAGFSAGEPAVPSFGSVKPQAQAAAT
AVAGAVAANTFMPAFTATSDANSQVKQGLGPELPRPNPVRIPTRRELASYGIKLPSQRMA
EQEQRNRGDDEPLPNANALPSDQDDEALQEAALRQAFAEQQNQRYGEEYAQDNQDDEAAL
QEAELRQAFAEQQNQRYGQQEAAPSVQPTTPVDTRNAFGFSPMDDLVDDGPVEPLFTLSP
QLEDRIEQQSEREDDVPFGQFEPAAPAYVPPTQPQTPPAQAYQPAQPAYQQPAAQQQPPA
YQQPVAQPAPTAPQQPAMDSLIHPFLMRNDMPLQKPTTPLPTLDLLTEAPKEVEPVDSFA
LEQKARLVEASLADYRVKADVVDILPGPVITRFELDLAPGVKAARISNLSRDLARSLSTS
AVRVVEVIPGKPYVGLELPNVKRQTVYLREVLDCPAFRDNPSPLAIVLGKDISGEPVVAD
LAKMPHLLVAGTTGSGKSVGVNAMILSILYKATPKEVRFIMIDPKMLELSVYEGIPHLLT
DVVTDMKDAANALRWCVAEMERRYKLMSALGVRNLAGYNERVDQAEAMGRPIPDPFWKPT
DSMDITPPVLEKEPYIVVMVDEFADLIMTVGKKVEELIARLAQKARAAGIHLVLATQRPS
VDVITGLIKANIPTRIAFTVSSKIDSRTILDQGGAESLLGMGDMLYLAPNSSIPVRVHGA
FVRDQEVHAVVKDWKARERPQYKEGILNGGDDGEGGAGGGLEGDEELDPLFDQAVEFVVD
KRRASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPRHD