Protein Info for IAI46_08500 in Serratia liquefaciens MT49

Annotation: macrolide ABC transporter ATP-binding protein/permease MacB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 648 transmembrane" amino acids 273 to 293 (21 residues), see Phobius details amino acids 523 to 548 (26 residues), see Phobius details amino acids 572 to 600 (29 residues), see Phobius details amino acids 611 to 631 (21 residues), see Phobius details PF00005: ABC_tran" amino acids 24 to 172 (149 residues), 114.8 bits, see alignment E=7.5e-37 PF12704: MacB_PCD" amino acids 272 to 491 (220 residues), 149.6 bits, see alignment E=2.4e-47 PF02687: FtsX" amino acids 527 to 641 (115 residues), 70.4 bits, see alignment E=2.1e-23

Best Hits

KEGG orthology group: K05685, macrolide transport system ATP-binding/permease protein [EC: 3.6.3.-] (inferred from 96% identity to spe:Spro_1671)

Predicted SEED Role

"Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-)" in subsystem Multidrug Resistance Efflux Pumps (EC 3.6.3.-)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.-

Use Curated BLAST to search for 3.6.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (648 amino acids)

>IAI46_08500 macrolide ABC transporter ATP-binding protein/permease MacB (Serratia liquefaciens MT49)
MAALLELSGISRSYQSGDQTVAVLKNVSLSIEAGEMVAIMGASGSGKSTLMNILGCLDKP
SAGVYRVAGQDVATLDSDALARLRREHFGFIFQRYHLLPHLSAAHNVEVPAVYAGLGKAA
RRERAVALLQRLGLSERVSYRPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG
EEVMTILKQLREQGHTVIIVTHDPAVAQQAERIIEIRDGEIIADSRPDGQSNPNAKPLEM
VTPAPSWQQTIGRFREALVMAWRAMAASKMRTALTMLGIIIGIASVVSILVIGDAAKQMV
LADIKSIGTNTVDIYPGKDFGDDDPTFRQALKYDDLAALREQPYVSALSPSIASSMRLRL
GNVDVAANVNGVSEQFFRVYGMTFTEGVGIDQLQVQSQSQTVVIDANTQRRLFPNQKEVV
GRVILVGNMPATVVGVAKEKQSMFGSSKTLNVWVPYSTMANRLMGNAYFDSITVRIRDGY
NSQEAEQQLTRLLTLLHGKKDVFTYNMDSLVQTAEKTTRTLQLFLTLVAVISLVVGGIGV
MNIMLVSVTERTREIGIRMAVGARSGDVLQQFLIEAVLVCLVGGALGITLSFAIGLLVQL
VLPGWQISFPPAALLSAFVCSTAIGVVFGYLPARSAARLNPIDALARE