Protein Info for IAI46_08320 in Serratia liquefaciens MT49

Annotation: phosphatase PAP2 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 transmembrane" amino acids 28 to 47 (20 residues), see Phobius details amino acids 83 to 101 (19 residues), see Phobius details amino acids 107 to 127 (21 residues), see Phobius details amino acids 139 to 152 (14 residues), see Phobius details amino acids 162 to 181 (20 residues), see Phobius details amino acids 188 to 208 (21 residues), see Phobius details amino acids 220 to 239 (20 residues), see Phobius details PF01569: PAP2" amino acids 112 to 235 (124 residues), 49.8 bits, see alignment E=1.5e-17

Best Hits

KEGG orthology group: None (inferred from 95% identity to srs:SerAS12_1608)

Predicted SEED Role

"Putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (244 amino acids)

>IAI46_08320 phosphatase PAP2 family protein (Serratia liquefaciens MT49)
MNPKPSLNQSSTTPQIQTNALYSLPASFYRWQVFGLIASGLLFLWLSRNEQLDWAISNYW
FDAASGHFPWQNNHWLDLINHRLLKIGVITGAVLALFWGIYRRNPRMIVTMLLIGIGPLV
VGILKATSAHSCPWDLIEYGGKAMSYPLFGAIPAVPGPGRCFPGGHASSGFAVMALFFLF
YPQRPRLAYWCWFGGIVLGMLMGFGQVMRGAHFLTHNLWAGWWVWLSQLAVYCMASGFVR
RKTR