Protein Info for IAI46_08315 in Serratia liquefaciens MT49

Annotation: undecaprenyl-diphosphate phosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 201 transmembrane" amino acids 28 to 47 (20 residues), see Phobius details amino acids 59 to 81 (23 residues), see Phobius details amino acids 103 to 122 (20 residues), see Phobius details amino acids 129 to 147 (19 residues), see Phobius details amino acids 154 to 178 (25 residues), see Phobius details PF01569: PAP2" amino acids 66 to 167 (102 residues), 48.5 bits, see alignment E=4e-17

Best Hits

Swiss-Prot: 57% identical to YBJG_ECOLI: Putative undecaprenyl-diphosphatase YbjG (ybjG) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 94% identity to srr:SerAS9_1607)

MetaCyc: 57% identical to undecaprenyl pyrophosphate phosphatase (Escherichia coli K-12 substr. MG1655)
Undecaprenyl-diphosphatase. [EC: 3.6.1.27]

Predicted SEED Role

"Putative permease"

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.1.27

Use Curated BLAST to search for 3.6.1.27

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (201 amino acids)

>IAI46_08315 undecaprenyl-diphosphate phosphatase (Serratia liquefaciens MT49)
MEQLNYLLFAWINATPASPEGSIDVATFLARDLIAIVPMLIIGLWLWGPQNQLVSQREVV
AKTTIALLFAMLSAATIGMLLPHERPFVAGVGYTFLAHAPDSSFPSDHGTAIFTFALAFL
FWHRVWSGILLLIVAAGIAWSRVYLGVHWPLDMVGGFLLGLVGCLFAQLVWNLFGDIIAA
KLTRLYRFLFAFPIRKGWVKE