Protein Info for IAI46_08165 in Serratia liquefaciens MT49

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 629 transmembrane" amino acids 603 to 621 (19 residues), see Phobius details PF00535: Glycos_transf_2" amino acids 289 to 419 (131 residues), 66.2 bits, see alignment E=3.6e-22 PF13641: Glyco_tranf_2_3" amino acids 292 to 481 (190 residues), 48 bits, see alignment E=1.5e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (629 amino acids)

>IAI46_08165 glycosyltransferase (Serratia liquefaciens MT49)
MSDSQYNDSFYANQIDGSYLAAKKILEYIRQYHDFKSAVDIGSGLCAWLKVCQELGADKL
LGLDGDYVNRDNLLIDDRYFKSCDLERDDISINDKFDIAISLEVIEHLSESRGIYLINKL
CSLSDVVLFSGAIPFQGGTEHISEQWPQKWAIEFINNGFVPIDLIRPRFWNDNSLPWWYR
QNIFVYAKKGSALEENESLRPALSMPMAAVHPELYLLANTKQEKVESTIADFYLSGLLNQ
ENMLKNSGYMDVSQFSNKYDACLKRTTEAIEFPFSHNYEHSKESDKCVSIIMRTQNRPIL
FSRAIASVVEQTYQNWYLYVINDGGDPDIVNESIRPFDTLLQGRITVVHNPKALGMEAAS
DKAAEKITSEFAVVHDDDDSWHPDFLKECVSFLTDKENKAYGGVVTHTTLIRELLTDNSI
RFIEEMDFNCWYNEIDIYRLLGENTFAPISFVFRSELFSQVGLFNRDLPVLGDWDFNIRA
LLVADIAVLPKKLAYYHHRVQTENSSYGNSVTQGLNKHQRFNILYRNALLRKSLEDAPWQ
AGILLNDAKNNHDLNKRITDLEHQLREIKELNGLVLSDVHELLHYHMGFKKEHIEISKNT
YSLVLRIFSVLSKMARPVIFIKRKVFRVK