Protein Info for IAI46_07240 in Serratia liquefaciens MT49

Annotation: urea ABC transporter ATP-binding protein UrtD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 TIGR03411: urea ABC transporter, ATP-binding protein UrtD" amino acids 27 to 268 (242 residues), 376.8 bits, see alignment E=2.5e-117 PF00005: ABC_tran" amino acids 43 to 198 (156 residues), 105.9 bits, see alignment E=4.2e-34 PF12399: BCA_ABC_TP_C" amino acids 245 to 267 (23 residues), 35.7 bits, see alignment (E = 7.5e-13)

Best Hits

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein (inferred from 97% identity to spe:Spro_1424)

Predicted SEED Role

"Urea ABC transporter, ATPase protein UrtD" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (268 amino acids)

>IAI46_07240 urea ABC transporter ATP-binding protein UrtD (Serratia liquefaciens MT49)
MNSLQMTDELFTQPLPADKHRQQTDPVLLLDKINVSFDGFRALSDLSLQIGVGELRCVIG
PNGAGKTTLMDVITGKTRPDSGRVFYDQTVDLTALDPMQIAQAGIGRKFQKPTVFEALTV
FENLEIAQKAKKSVWACLRARLSGEQSDRIDEMLKTLRLGHERHRPAGLLSHGQKQFLEI
GMLLVQEPHLLLLDEPAAGMTDAETEYTAELFRALAGKHSLMVVEHDMGFVETIADHVTV
LHQGQVLAEGSLAQVQANEQVIEVYLGR