Protein Info for IAI46_07015 in Serratia liquefaciens MT49

Annotation: LysE family translocator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 197 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 43 to 65 (23 residues), see Phobius details amino acids 72 to 90 (19 residues), see Phobius details amino acids 139 to 165 (27 residues), see Phobius details amino acids 177 to 194 (18 residues), see Phobius details PF01810: LysE" amino acids 15 to 194 (180 residues), 82.1 bits, see alignment E=2e-27

Best Hits

KEGG orthology group: None (inferred from 94% identity to spe:Spro_1384)

Predicted SEED Role

"Transporter, LysE family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (197 amino acids)

>IAI46_07015 LysE family translocator (Serratia liquefaciens MT49)
MNIYLSMAAFALASSITPGPVNIVALSAGAQFGFNATLRHVSGATLGFTLLLILLGLGLN
TLLVLWPVLTQVIQWAGIAFLLFMAYQLAFDDGRLGQGSQPQAPSFWYGALLQWLNPKAW
LASVASLGAFVADGDRLLLWQFAVIYFVICYASVACWAYTGAMLTGLLQQARNVRRFNRL
MALLLAASACYLLADGI