Protein Info for IAI46_05735 in Serratia liquefaciens MT49

Annotation: NADP-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 311 PF08240: ADH_N" amino acids 30 to 96 (67 residues), 45.3 bits, see alignment E=1e-15 PF00107: ADH_zinc_N" amino acids 157 to 235 (79 residues), 56.2 bits, see alignment E=5.4e-19 PF13602: ADH_zinc_N_2" amino acids 188 to 308 (121 residues), 56.2 bits, see alignment E=1.2e-18

Best Hits

KEGG orthology group: None (inferred from 43% identity to vap:Vapar_6211)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (311 amino acids)

>IAI46_05735 NADP-dependent oxidoreductase (Serratia liquefaciens MT49)
MNQQLAAVMYSYGAEGTIKIQPINRPQVSPGKVIVEIAAAGVNPLDWKLRDGLLKHIFPL
TFPCILGGEFAGKIVEVGAGVTTFNVGDRVIGKPVNRGAFAETIEIEPELLIPIPDDLDE
TVAATLPVAGSTAWTGLFDIGELTAGQTVLIQGAAGGVGSLAVPLAHRAGAKVIATASQK
NRDYVKSLGATDVVGYNDAHALSMIKGVDLVLDLVGGRSLEALWNTLAPNGRIVSSVAVD
IAEKTPDSQPGKGTFFQMKFDPAKLNSIAKEIAKGEIPFTPPRVFYLKDTSLALDSVKSG
GYRGKTVIRMK