Protein Info for IAI46_05595 in Serratia liquefaciens MT49

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1178 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 36 to 60 (25 residues), see Phobius details amino acids 386 to 409 (24 residues), see Phobius details PF14331: IcmF-related_N" amino acids 184 to 348 (165 residues), 95.2 bits, see alignment E=2.1e-31

Best Hits

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1178 amino acids)

>IAI46_05595 hypothetical protein (Serratia liquefaciens MT49)
MFKKLIAFTAWAFLLCMLLIACLVIATVIEWSLISGFILWFVLIIAILGIRLAWVGIVGL
SKTKFFGKLTASFKLSRMEQVLSEHWKAGAKVIKRIRHSKQPLPWFVLTGQRCGKTTLMA
STGLPLFSNEPESGVVVPTRTLRWWFFRSAGFLDLSSQFLSKSPAFERAWLRLVSWSRRL
PVPAGIVVCVSADDLQQKSMAELSLNARHVRTQIEPLIKKVKRRLPVYVVITCCDQLPGF
ILWSNKLSPAQRQQALGHYWLQSPVVDGKDPAFLNPLFSMVKEGLDNVRISMFTGLPPDE
DTLQLLDFPEQLGQLQPALQSYLAALCEPDAYFEPGALGGVWFTATVPISKNSAMRQAVF
LHDLLVHQLPKLNKLRQVDVIGFWRCFLQQWGVVLAASMTLAILFFYGMRTHSLTGGDFN
TLSVAQQVKKLVQIERGLQQPLQYLPFIPVLNYRYSQLERLVLRSVPTPVVESNVIVEHY
ERRFNKATPQQQRDYIIDLAESIITKQAMLEYRPIAELYELPQIPTALSLVDNTIPVQKP
HNSLAANKIYGHGQIPLLLRKTSEHSVLSHEHDVVIQRALLQQTGGVEHVKTLRQLLAKL
VNGDSQWQWLLAADPELPPVKLIDFFPSGDSQQQLAGQWTQTGIAQISLWINKVRKAAGE
DIKLAALDNFDLQWGKLRQDQWMKLLLAISQLQPPVQGVEQWQDTLIEIEQGNSPSMKLS
RYIVQQLADVPNNEATPWLRELRKLNRLQKTNKIAPLMQNKERIELAISQKIASKFKVEQ
KTLVSPLKDSNINAWNEWQTSLRAAVAEAVATPENSDNLTRGLFRSEKEGAGSSNSLRKL
SGRFTALRQSINPAKDDAAVNVVWSLYMNDMHLLIAHAMQRSSCWIQGQWQSRVLWPMEK
NAMQLDYQEQQEMTWQYLSDFIRGPAKSVLVVGNNGPAAGEYEGHSLSLSPEFMRLVNHV
LRPDDVLSMPERANTRSEDKLARLQETQAKLEAELTVIEEQPVELTLTSQPATVPGGARL
MPTGSQLTLFCDAQRWDLKSMNFSEQTLFQWQPGHCSRVTQKINFPGFDLSFDYIGDNAW
PDFIRDITQGKLSFSVEDFPEQSSTLTSLGIKEILVRYQFDKQNAVQATWLRWKATADAL
SENALAQQQIMDKKTEQVLPSALNGNISQLPAKIADCR