Protein Info for IAI46_05590 in Serratia liquefaciens MT49

Annotation: DotU family type IV/VI secretion system protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 transmembrane" amino acids 112 to 130 (19 residues), see Phobius details amino acids 184 to 204 (21 residues), see Phobius details PF09850: DotU" amino acids 4 to 199 (196 residues), 88.6 bits, see alignment E=2.3e-29

Best Hits

KEGG orthology group: K11892, type VI secretion system protein ImpK (inferred from 55% identity to rah:Rahaq_4929)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (205 amino acids)

>IAI46_05590 DotU family type IV/VI secretion system protein (Serratia liquefaciens MT49)
MMNLLNCYVPVFRFITSFVLEVREYNDFSIFRNKCIQLLQQARLAAELHYSPQDCEDADF
AVVIWLDEQVLCSDPDWVKQWRTVLLQHHYFDLSTGGGEFFSRLDSIDKDKYQIRMVYLF
CLLMGFHGQYAQQDIELQRRISDERQCLPEPWRQWPNNAPIISDSLSFHGEMKSIRKRFR
HRKLLILSMVLVTYLIIFIAVLGII