Protein Info for IAI46_05585 in Serratia liquefaciens MT49

Annotation: type VI secretion system baseplate subunit TssK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 464 TIGR03353: type VI secretion protein, VC_A0114 family" amino acids 6 to 461 (456 residues), 323.2 bits, see alignment E=1.2e-100 PF05936: T6SS_VasE" amino acids 20 to 461 (442 residues), 292.8 bits, see alignment E=2.1e-91

Best Hits

KEGG orthology group: K11893, type VI secretion system protein ImpJ (inferred from 67% identity to rah:Rahaq_4928)

Predicted SEED Role

"Uncharacterized protein ImpJ/VasE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (464 amino acids)

>IAI46_05585 type VI secretion system baseplate subunit TssK (Serratia liquefaciens MT49)
MYPEQQQIYWHSGLYLQPQHFQSIDLHNEWQDAQIRRSAQPYNHGMVELKVNKAALQDFV
VSIDSVDCIMPGGTYLSYPGNCRLEKRNFRDTWKQRDQPFTLWLALRRFDPQHNNVTLLK
KEYERAGTRWVNTSDDPVMKDIYDQAPEATVARLCYNARILVEEEIQDAVDCECIPLIRL
RYEKDRVVFDPDFSAPAVTLNGSASLYELIETIYYDVSARAKKLEEYKRSERLVSGSDRG
DQITQLLAMRTLNHALPLLKNMLQVRQVHPWKVYCSLSQLIGELSSFNEGCSFLGEWRTG
NDNLQPYDHEQLNSCFNSAHKTLARLLNNLVLEDNVYITMEKDINGVYTSHFEYEQSQSA
EKILLLLRSSTIQMENQKTKNTDGIKLASTRSINLLIQHALPGAPVTLCQQAPRGVPNRS
DSSYFIVDRQSELWTTAEQDKSISFYWSDMPEDLHVQLIFVVPT