Protein Info for IAI46_05000 in Serratia liquefaciens MT49

Annotation: transcriptional regulator BolA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 104 PF01722: BolA" amino acids 10 to 83 (74 residues), 95.9 bits, see alignment E=6.7e-32

Best Hits

Swiss-Prot: 83% identical to BOLA_SHIFL: DNA-binding transcriptional regulator BolA (bolA) from Shigella flexneri

KEGG orthology group: K05527, BolA protein (inferred from 99% identity to spe:Spro_1093)

Predicted SEED Role

"Cell division protein BolA" in subsystem Bacterial Cell Division

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (104 amino acids)

>IAI46_05000 transcriptional regulator BolA (Serratia liquefaciens MT49)
MIREQIEAKLRAAFEPAYLEVVDESYRHNVPAGSESHFKVVLVSDRFVGERFLTRHRSIY
GVLSEELADGVHALALHTYTLKEWEGLQDTVPASPPCRGAGTLA