Protein Info for IAI46_04710 in Serratia liquefaciens MT49

Annotation: recombination-associated protein RdgC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 PF04381: RdgC" amino acids 2 to 300 (299 residues), 418.9 bits, see alignment E=5.7e-130

Best Hits

Swiss-Prot: 99% identical to RDGC_SERP5: Recombination-associated protein RdgC (rdgC) from Serratia proteamaculans (strain 568)

KEGG orthology group: None (inferred from 99% identity to srr:SerAS9_0949)

Predicted SEED Role

"DNA recombination-dependent growth factor C" in subsystem CBSS-562.2.peg.5158 SK3 including or DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (303 amino acids)

>IAI46_04710 recombination-associated protein RdgC (Serratia liquefaciens MT49)
MLWFKNLMVYRLSREVALNADEMEKQLSAFAFTPCGSQDMAKTGWVSPMGSHSDALTHAV
NGQIVICARKEEKILPSPVIKQELQAKIERLEGEQHRKLKKTEKDALKDEVLHSLLPRAF
SRFNQTFMWIDTVNDLIMVDAASAKRAEDTLALLRKSLGSLPVVPLTMESPIELTLTEWV
RSGELPAGFIIQDEAELKAILEDGGVIRCKKQNLISDEIAVHIEAGKLVTKLAVDWQERI
QLVLADDGSLKRLKFADTLREQNDDIDRDDFAQRFDADFILMTSELAALIKNTIEALGGE
AQR