Protein Info for IAI46_04690 in Serratia liquefaciens MT49

Annotation: OPT/YSL family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 521 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 41 to 59 (19 residues), see Phobius details amino acids 77 to 98 (22 residues), see Phobius details amino acids 104 to 124 (21 residues), see Phobius details amino acids 158 to 178 (21 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details amino acids 217 to 238 (22 residues), see Phobius details amino acids 258 to 280 (23 residues), see Phobius details amino acids 287 to 310 (24 residues), see Phobius details amino acids 316 to 343 (28 residues), see Phobius details amino acids 384 to 405 (22 residues), see Phobius details amino acids 427 to 447 (21 residues), see Phobius details amino acids 456 to 483 (28 residues), see Phobius details amino acids 496 to 516 (21 residues), see Phobius details PF03169: OPT" amino acids 18 to 198 (181 residues), 42.3 bits, see alignment E=2.2e-15 amino acids 250 to 516 (267 residues), 69 bits, see alignment E=1.8e-23

Best Hits

KEGG orthology group: None (inferred from 96% identity to spe:Spro_1023)

Predicted SEED Role

"FIG01055826: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (521 amino acids)

>IAI46_04690 OPT/YSL family transporter (Serratia liquefaciens MT49)
MKSNTTINPLKDIGTLLVMVILSIVGAIIGVQLITTLGVTPNTSIIGALFAMLLARIPLQ
MFQRYRSVHTQNLAQTVISSATFGAANSLLMPIAVPYVMGQPQLILPMFCGVAVAMLLDA
YLLYRMFDTKIFPAANAWPPGVAAAEAIKAGDRGGKQAWLLVVGVAVGIAGSMLKIPMAA
FGTAFIGNIWALGMFGVGLLLRAYAEPMAGFDINAHFIPHGVMVGAGLVALIQVVQVIRS
KSVDAAGYSQADSEVSKALGLGAVGYIVIAALLALAGGLYSEMSLTMLVLFVIYAAFAAF
VHELIVGIAAMHSGWFPAFAVALITLIIGILIGFPPVALCVLTGFTAATGPAFADMGFDL
KAGFILRGYGKDLQQELLGRRIQLFAALIAFVIAIPVVYFAYSSYFLQDLIPPVARVYAK
TIEAGAQPGIAFSLLIWAIPGAIVQLIGGPKRQLGVLLATGLLINNALAGWAVLLGIALR
ILIIRRWGDKGRTPMEIMAAGFIAGDALYNFFNSIFSSKGK