Protein Info for IAI46_04550 in Serratia liquefaciens MT49

Annotation: DeoR/GlpR transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF08220: HTH_DeoR" amino acids 9 to 63 (55 residues), 55.4 bits, see alignment E=6.1e-19 PF08279: HTH_11" amino acids 9 to 50 (42 residues), 22.5 bits, see alignment 1.3e-08 PF00455: DeoRC" amino acids 78 to 232 (155 residues), 131.9 bits, see alignment E=3.3e-42

Best Hits

KEGG orthology group: None (inferred from 89% identity to spe:Spro_0997)

Predicted SEED Role

"Transcriptional repressor of the fructose operon, DeoR family" in subsystem Fructose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (255 amino acids)

>IAI46_04550 DeoR/GlpR transcriptional regulator (Serratia liquefaciens MT49)
MSKMLPNQRHDAILATLQQQGRVLAVEMAERLKTTEATIRRDLRQLAAQNLCKRIYGGAL
APTPATGPISARLQLSGDEKQALALAALALVKEGQVIFLDAGSTHLYLAELLPRDLRLTV
VTNALTIAGKMLEQPGIRTILIGGELDADIGGCVDAKAVQEIDDFYFDLAFVGICAYDPG
CGFSALNYQDAQFKKRLLARSGNLAVLCTGDKLNTYAPYSFLPAHRVDYLVTPPGRHPQL
EQQITHSGGKVLYSD