Protein Info for IAI46_04065 in Serratia liquefaciens MT49

Annotation: glycosyltransferase family 2 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 572 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 282 to 296 (15 residues), see Phobius details amino acids 484 to 500 (17 residues), see Phobius details PF00535: Glycos_transf_2" amino acids 11 to 171 (161 residues), 61.2 bits, see alignment E=6.4e-21

Best Hits

KEGG orthology group: None (inferred from 90% identity to spe:Spro_0895)

Predicted SEED Role

"FIG143263: Glycosyl transferase / Lysophospholipid acyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (572 amino acids)

>IAI46_04065 glycosyltransferase family 2 protein (Serratia liquefaciens MT49)
MSVSAPFSPCLLIPCFNHGQMMAAVLTSLAGYGLPCLVVDDGSAAATAETLQRLAAERPW
VSLLRLEKNQGKGAAVIAGLQLAQRQGYSHALQVDADGQHQLSDIPAMIAEARAHPNCLI
SGRPVYDSSVPKARLYGRYVTHVWVWIETLSLSLKDSMCGFRVYPVAPTLALTARQPLGK
RMDFDTEVMVRLYWQGVQSRFLPTRVTYPVDGVSHFDALRDNLRISWMHTRLFFGMLPRI
PRLLRQRQRAKKAQHWSATQERHGLWGIRLMLKVYRMFGRRAFRWLLYPVIGYFWLTGRA
QRKASRDYLQRLRQFAHNRQQPLPTPLNSFRHFMRFGDAMLDKLASWRGELRDVRLVDPA
ACERQIASGRGTLILASHLGDIESCRALGELNSGVKVNALVFTEHAERFNQVMKEVNPRA
NLNLIPVTSLGPETAMRLQDKLDAGEWVAIVGDRTSAGKHQRGEQPRVVWSRFLGQSAPF
PQGPFVLAAALRCPVFLMFGLKQQGRLNVYFEPFADPLSLPRQQRQQALQDAVDRYAARL
EHYCLLAPLDWFNFFDFWQLAAPSPTQQGPET