Protein Info for IAI46_03785 in Serratia liquefaciens MT49

Annotation: murein hydrolase activator NlpD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 330 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF01476: LysM" amino acids 75 to 117 (43 residues), 40.6 bits, see alignment 2e-14 PF01551: Peptidase_M23" amino acids 230 to 323 (94 residues), 116.2 bits, see alignment E=6.4e-38

Best Hits

KEGG orthology group: K06194, lipoprotein NlpD (inferred from 97% identity to spe:Spro_0831)

Predicted SEED Role

"Lipoprotein NlpD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (330 amino acids)

>IAI46_03785 murein hydrolase activator NlpD (Serratia liquefaciens MT49)
MITLRRVAVCTMVSLWLAGCTNTASTSAPISSVDGGGAGAAASSNAGAQVGSEGHIVYNR
SYTSIPKGSYSGNTYTVKRGDTLFYIAWITGNDYRDLAQRNNIPEPYSLNVGQNIQLGNG
SASGNGGMLAATDATSGGVPKPPSTSQIQTATVDSQSTNAYSDNSGKQNVGKMLPAAGAV
AATTATAPVTAPVVAPPVSSTVSNSAPVSTWRWPTDGKIIDNFSSSEGGNKGVDIAGSRG
QPIFATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATM
GSTGTSSVRLHFEIRYKGKSVNPLRYLPQR