Protein Info for IAI46_03620 in Serratia liquefaciens MT49

Annotation: NAD(P)/FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 396 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF07992: Pyr_redox_2" amino acids 4 to 144 (141 residues), 34.5 bits, see alignment E=7.7e-13

Best Hits

KEGG orthology group: None (inferred from 95% identity to spe:Spro_0796)

Predicted SEED Role

"FAD-dependent pyridine nucleotide-disulphide oxidoreductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (396 amino acids)

>IAI46_03620 NAD(P)/FAD-dependent oxidoreductase (Serratia liquefaciens MT49)
MRNRIVIVGGGTGGTILANLLATKLHREILNNKVELLMISDSPIHYYKPAFMYVAFNAFF
KQELTRSQQSLLRPEIQFIVDKAERFDLTQRVIHTRSGKQYPYDFLVFATGCVPWPERIE
GLAQAGDHFYQYQAARQLAQKLSSIEKGRIFITVSFPETPNVPHQCGIAPIETTLMLDDY
LRRRGVRKAVEIVYTYPSVSQLLRNCLFLQRPTAEALPGIFAARDIRHQRGFTLSRVDEQ
QKIAYSAEGEQQPFDILMATPPIRAVEAVRNTGLSEGHKGEGWLPTDHQTLQVYGQQGVY
VIGDTVDLPVSKAGGSCHNQAPVIADNIVAELRLGQTVSHYDGKVQAIAQMGLQAGMPLV
YDYRNDVLPTPSTKVGGMLRNGFNRGLYWATVRGLI