Protein Info for IAI46_03420 in Serratia liquefaciens MT49

Annotation: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF01225: Mur_ligase
  • amino acids 24 to 92 (69 residues), 35.2 bits, E=2e-12
• TIGR01143: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
  • amino acids 29 to 447 (419 residues), 460.8 bits, E=2.2e-142
• PF08245: Mur_ligase_M
  • amino acids 106 to 294 (189 residues), 163.2 bits, E=1.2e-51
• PF02875: Mur_ligase_C
  • amino acids 314 to 382 (69 residues), 42.7 bits, E=8.5e-15

Best Hits

Swiss-Prot: 70% identical to MURF_ECOLI: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (murF) from Escherichia coli (strain K12)

KEGG orthology group: K01929, UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase [EC: 6.3.2.10] (inferred from 95% identity to spe:Spro_0757)

MetaCyc: 70% identical to D-alanyl-D-alanine-adding enzyme (Escherichia coli K-12 substr. MG1655)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. [EC: 6.3.2.10]

Predicted SEED Role

"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10)" in subsystem Methicillin resistance in Staphylococci or Peptidoglycan Biosynthesis (EC 6.3.2.10)

MetaCyc Pathways

• peptidoglycan biosynthesis I (meso-diaminopimelate containing) (12/12 steps found)
• UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) (8/8 steps found)
• UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) (7/8 steps found)
• UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing) (6/8 steps found)
• peptidoglycan biosynthesis III (mycobacteria) (11/15 steps found)
• peptidoglycan biosynthesis II (staphylococci) (12/17 steps found)
• peptidoglycan biosynthesis IV (Enterococcus faecium) (12/17 steps found)
• peptidoglycan biosynthesis V (β-lactam resistance) (11/17 steps found)

KEGG Metabolic Maps

• Lysine biosynthesis
• Peptidoglycan biosynthesis

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.3.2.10

Protein Sequence (453 amino acids)

>IAI46_03420 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase (Serratia liquefaciens MT49)
MIPVSLQALADVLSAELIGADCQIVEVTTDTRQVTAGCLFVALKGERFDAHDFAVDAVAA
GAGALLVSKRLLVDVPQLVVKDTRLALGQLAAWVRKQVPARVVALTGSSGKTSVKEMAAA
ILRECGEVLYTAGNFNNDIGVPLTLLRLQPQHDFAVIELGANHIGEIAYTTALTCPQTAL
VNNLAAAHLEGFGSLAGVAQAKGEIFTGLPADGVAIINADNNDWPHWQNMLEGKTVWRFS
PQAAEGVDFFASDVQVNGEGTQFTLHSPFGTAPIALPLPGRHNVANALAATALAMSAGAS
LEAVRQGLKQLQAVPGRLFPIALSAGKLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVG
DMAELGAEAEECHRQVGEAARLAGVDKVLGVGPLSQTLIAAAGNGEHFQDKAAVTARVAE
LLSEHAVITVLIKGSRSAAMEQVVRALQEKAPC