Protein Info for IAI46_02555 in Serratia liquefaciens MT49

Annotation: trehalose-6-phosphate synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 PF00982: Glyco_transf_20" amino acids 28 to 235 (208 residues), 138.5 bits, see alignment E=1.5e-44

Best Hits

KEGG orthology group: None (inferred from 88% identity to srr:SerAS9_0520)

Predicted SEED Role

"Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15)" in subsystem Trehalose Biosynthesis (EC 2.4.1.15)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.4.1.15

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (236 amino acids)

>IAI46_02555 trehalose-6-phosphate synthase (Serratia liquefaciens MT49)
MSRLVLISNKQCDGKDLACATQALSPDGQSDDDRGLWLGWNGDVQNFGDAPLRPVSYQHR
SGYEQVTFPLSTEEFHFHYQGYYHDGLWPVFHNHPEKAHFTPENYRAYRQLNRHFADIAC
EYICPNDIICIDDYQLLPCGQALKEQGLLNPCAFFFHLPFPSTALLRQIPEHHGLIESLF
FYDLIGFQTLDDRNNFLSYLTHEYPVEMLPDGQLQVNGHIFATGIFPAGINARKIY