Protein Info for IAI46_02115 in Serratia liquefaciens MT49

Annotation: permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 352 transmembrane" amino acids 16 to 34 (19 residues), see Phobius details amino acids 71 to 96 (26 residues), see Phobius details amino acids 113 to 138 (26 residues), see Phobius details amino acids 148 to 170 (23 residues), see Phobius details amino acids 175 to 193 (19 residues), see Phobius details amino acids 229 to 254 (26 residues), see Phobius details amino acids 266 to 285 (20 residues), see Phobius details amino acids 293 to 319 (27 residues), see Phobius details amino acids 326 to 351 (26 residues), see Phobius details PF03773: ArsP_1" amino acids 79 to 347 (269 residues), 109.1 bits, see alignment E=1.2e-35

Best Hits

KEGG orthology group: K07089, (no description) (inferred from 94% identity to spe:Spro_0523)

Predicted SEED Role

"FIG006303: protein yraQ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (352 amino acids)

>IAI46_02115 permease (Serratia liquefaciens MT49)
MPHPLTATEHRARPWPWWKPALFLLVVAIGLYYVKWQPYYGKAFLAADTHSIGKSILVND
DSSPWLAAWHYALVYFTAVWKAAVLGVVLGSLVQVLIPRDWLMRTLGHPRFSGTLLGAVI
ALPGMMCTCCAAPVAAGLRRQSVSSGAAMAFWLSNPVLNPATLIFMGFVLGWQFAAIRLV
AGVIMVLGIAWLVQRATARDPQPAALQTPLLPLDKADERPFFGRWLKALWSLFWSTIPVY
ILAVLALGAARVWLFPHADGAIDNSVLWIIGLAIAGCLFVIPTAAEIPIVQTLMLAGMGT
GPALALLMTLPAVSLPSLLMLNKAFSAKALCLTALLVALCGIVTGVVGMGLV