Protein Info for IAI46_01800 in Serratia liquefaciens MT49

Annotation: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 459 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF01225: Mur_ligase" amino acids 2 to 99 (98 residues), 78.6 bits, see alignment E=5.6e-26 TIGR01081: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase" amino acids 2 to 449 (448 residues), 871.5 bits, see alignment E=6.9e-267 PF08245: Mur_ligase_M" amino acids 108 to 290 (183 residues), 63.6 bits, see alignment E=3.9e-21 PF02875: Mur_ligase_C" amino acids 312 to 360 (49 residues), 34 bits, see alignment 4.4e-12

Best Hits

Swiss-Prot: 87% identical to MPL_ECOLI: UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase (mpl) from Escherichia coli (strain K12)

KEGG orthology group: K02558, UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC: 6.3.2.-] (inferred from 97% identity to spe:Spro_0465)

MetaCyc: 87% identical to UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptanedioate ligase (Escherichia coli K-12 substr. MG1655)
RXN0-2361 [EC: 6.3.2.45]; 6.3.2.45 [EC: 6.3.2.45]

Predicted SEED Role

"UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-)" (EC 6.3.2.-)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.3.2.-

Use Curated BLAST to search for 6.3.2.- or 6.3.2.45

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (459 amino acids)

>IAI46_01800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (Serratia liquefaciens MT49)
MRIHILGICGTFMGGLAVLARSLGHEVTGSDANVYPPMSTLLEKEGIDLIQGYDPAQLDP
APDLVIIGNAMTRGNPCVEAVLEQGIPYVSGPQWLHDYVLRDRWVLAVAGTHGKTTTAGM
ATWILEACGYQPGFVIGGVPGNFDVSARLGGSPFFVIEADEYDCAFFDKRSKFVHYSPRT
LIMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGKIILPDNDNHLKQVMAMGCWSEQEL
VGEEGAWRAQKLTPDASHYAVFLDGEQVGEVKWSLVGEHNMHNGLMAIAATRHVGVLPAD
ACRALGEFINARRRLELRGEAHGVTVYDDFAHHPTAILATLAALRGKVGGTARILAVLEP
RSNTMKMGISKNDLAPSLGRADEVFLFQPHHIPWQVAEVAEACVQPAHWSADLDTLVDMI
VKTAQPGDHILVMSNGGFGGIHDRLLEALAHKSEPKVTY