Protein Info for IAI46_01775 in Serratia liquefaciens MT49

Annotation: translocation/assembly module TamB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1272 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF04357: TamB" amino acids 936 to 1272 (337 residues), 255.3 bits, see alignment E=5.9e-80

Best Hits

Swiss-Prot: 66% identical to TAMB_CITRI: Translocation and assembly module subunit TamB (tamB) from Citrobacter rodentium (strain ICC168)

KEGG orthology group: K09800, hypothetical protein (inferred from 69% identity to eay:EAM_0460)

Predicted SEED Role

"Uncharacterized protein YtfN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1272 amino acids)

>IAI46_01775 translocation/assembly module TamB (Serratia liquefaciens MT49)
MSLIKKICFGFLIVLLLLVGAVAYLLGTTSGLHMTLNAAARWVPGLDIASVSGGWRDLTL
KGVKYQMPGVTVNAGQFHLSLDLACFKNSSLCVNALTAQDVDVVVKTKEMTPSAPVEETS
EPTTNLSTPYPITLRMLTLNNVKVSVDDTAISLGEFRTGAQWQERALTLLPTKISGLLIA
LPKTPQNPLPEAIQPAVEVAKKVGEQVDKAAKPAPVPEEKPLGETLKELFAKPLLPDLPE
IRLPLDIMVKEISGEQLRLTGDTEVLITSLLLQASTQDQHIKLDNFDVKSPQGTLSAQGQ
ATLTGSWPVEMVANSTLNIEPLKGEKVKLNVGGGLREELKVALNLSGPVGAQLDVQTQLA
EVGLPLALTLQSKQLKWPLNGEAQYQVNDFRLRFNGKATDYALSTRANIKGQDLPPAVLT
LDGKGNVEQFKLDRLRLAALQGNTDLTALVDWSKAISWNSQLTLSGINTAKQWPEWPAKL
DGKITTRGSLHGGSWQLQVPLLQLDGNVKQNKVTARGTLSGNAAGQWKIPGIDLTLGRNQ
LNVKGQLDEKSWNLDANIDAPRLDGALPGLGGTAKGLLKLRGNLQAPQLLADLTASGLQW
QALRINRVKIDGDVRSSDQIQGQLAVRVEQLKQDALDISLLTLDAKGSEKQHQLQLKIDG
KPVSGQLALQGSFDRQQQRWRGNLNNTRFDTPVGEWRLTRAIALDYLNTAQKISIGPHCW
QNPNAELCVPKTIEAGPSGQASVVLNRFDLAMIKPFLGPETALSGVFTGRADVSWKPGGA
LPDAKVSLVGNGVKVVQQVQGNALPIAFDRLNLNAGLSNGRAQADWLIKLTNNGQFDGNV
QVADPQVRRIISGNVNITNISLAMINPALMKGEKAAGMLNANLRLGGSAQKPLVYGRMAL
DKVDIDGHWMPFDMTDGRLVMNFDGMTSTMEGLVSTTRGQLNLSGDADWRDINAWRARIA
AKGDKLRVTVPPMIRIDVSPDLVFEATPQLFSLNGSVDIPWARITVQELPESAVGVSSDE
VMLDDQLKPIQPKTAGIPINSNLMIHVGNDVRLDAFGLKARLKGDLKVVQDKNGLGLNGQ
IDIPSGRFHAYGQDLIVRKGQLMFSGPPDQPLLNIEAIRNPESTEDDVTAGVRVTGLADA
PKLEVFSDPAKSQQEALSYLLRGQGLGSSGADGNAMTSMLIGMGVAQSGQLVGKIGEAFG
VSNLALDTQGVGDNSQVVVSGYVLPGLQVKYGVGIFDSLATLTLRYRLMPKLYLEAVSGL
DQALDLLYQFEF