Protein Info for IAI46_00995 in Serratia liquefaciens MT49

Annotation: sn-glycerol-3-phosphate ABC transporter permease UgpA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 295 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 73 to 100 (28 residues), see Phobius details amino acids 112 to 136 (25 residues), see Phobius details amino acids 157 to 181 (25 residues), see Phobius details amino acids 203 to 228 (26 residues), see Phobius details amino acids 267 to 288 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 86 to 293 (208 residues), 66.1 bits, see alignment E=1.8e-22

Best Hits

Swiss-Prot: 92% identical to UGPA_YERE8: sn-glycerol-3-phosphate transport system permease protein UgpA (ugpA) from Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)

KEGG orthology group: K05814, sn-glycerol 3-phosphate transport system permease protein (inferred from 99% identity to spe:Spro_0235)

MetaCyc: 82% identical to sn-glycerol 3-phosphate ABC transporter membrane subunit UgpA (Escherichia coli K-12 substr. MG1655)
ABC-34-RXN [EC: 7.6.2.10]; 7.6.2.10 [EC: 7.6.2.10]

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (295 amino acids)

>IAI46_00995 sn-glycerol-3-phosphate ABC transporter permease UgpA (Serratia liquefaciens MT49)
MSSHRPGFGCSWLPYVLVLPQLLITAIFFLWPAGEALWYSVQSLDPFGLSSQFVGLDNFT
QLFHDPYYLDSFYTTLIFSFLVAGIGLVVSLFFAALVDYVLRGSRIYQTLMILPYAVAPA
VAAVLWIFLFNPGLGLITHFLNGLGYSWNHAQNSGQAMFLVVLASVWQQISYNFLFFLAA
LQSIPRSLVEAAAIDGAGPVRRFFNLVLPLITPVSFFLLVVNLVYAFFDTFPVIDAATGG
GPVQSTTTLIYKIYREGFAGLDLSSSAAQSVILMLLVIGLTVIQFRFVERKVRYQ