Protein Info for IAI46_00950 in Serratia liquefaciens MT49

Annotation: DUF3142 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF11340: DUF3142" amino acids 87 to 288 (202 residues), 261.7 bits, see alignment E=2.9e-82

Best Hits

KEGG orthology group: None (inferred from 85% identity to spe:Spro_0226)

Predicted SEED Role

"FIG01055313: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (405 amino acids)

>IAI46_00950 DUF3142 domain-containing protein (Serratia liquefaciens MT49)
MKRRFLALLVLVLALIAWFGGRQLALRIQPTWDNQVYVWQRVWTPQHVAALAQSRDLFPT
LRVLGLQVHPREGWREIPVNLPLLKQDGRPLWLVARLDGQLTQLDEVAIRQRLLKQVQRW
QAAGLQVIGVEIDHDAATARLPAYQHFLQQLRQQLPSSLQLGITALPAWIGSAALPGVLQ
QADSSVLQVHAVLSPEQGLFAAPLALRWVKQYAQITPRPFRVALPAYGMGLVGFDTQGAQ
VESEASVRVAGTSRELTVAPQQVADFLRQLNTRTTPHLLGLIWFRLPLTDDRRAWSLATL
RAVIEKQPLDVSWQVKFSPQALQNGLNDLIIQNNGPVDAPLPHEIVITASECLAADAAGN
YRLESEPQRLRFVLTRSDQLRAGQSRPLGWIRCQQLTPGGTLVTP