Protein Info for IAI46_00840 in Serratia liquefaciens MT49

Annotation: DUF4056 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 373 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF13265: DUF4056" amino acids 41 to 303 (263 residues), 442.4 bits, see alignment E=2.8e-137

Best Hits

KEGG orthology group: None (inferred from 86% identity to spe:Spro_0206)

Predicted SEED Role

"corresponds to STY3950 from Accession AL513382: Salmonella typhi CT18"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (373 amino acids)

>IAI46_00840 DUF4056 domain-containing protein (Serratia liquefaciens MT49)
MRSVVLLVLLSFTSALSANPVETLVTSQPINESRIAWPVAAPLSPPDGLRPCCAFGYNLK
AQVWGIPVPFYQLGNLVDADRLGRHHYNDSAFNAVSNLMGLGSEQLGVMYTRRGGFIDIA
HVRDTADNTLFLFSQLLPRLGQQWNIDLSPELAIRRIQLNAFTPPQDAAQRYTLAAYLAG
ELAFQMAAWHEVAQWYGYQSVPGFSEEVSAFSPEDLYSNLLGSRLAIDAILQGQAVSLTA
YNQAMENLLPQALHQLGAVSIRATQRQFDGIDGDWWDSHRRVPEKFLVLKRDYTTGSNRL
PALPPFENTAPQRLMLPLQVQGFWLAKLGELQLWPTDAMHSLPVPSHYYRPQDFRGLAMH
ARASDAQQILQKR