Protein Info for IAI46_00725 in Serratia liquefaciens MT49

Annotation: tyrosine recombinase XerC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 PF02899: Phage_int_SAM_1" amino acids 12 to 95 (84 residues), 66.3 bits, see alignment E=2.4e-22 TIGR02224: tyrosine recombinase XerC" amino acids 14 to 300 (287 residues), 351.6 bits, see alignment E=1.9e-109 PF00589: Phage_integrase" amino acids 117 to 286 (170 residues), 185.8 bits, see alignment E=6e-59

Best Hits

Swiss-Prot: 92% identical to XERC_SERMA: Tyrosine recombinase XerC (xerC) from Serratia marcescens

KEGG orthology group: None (inferred from 96% identity to srr:SerAS9_0145)

Predicted SEED Role

"Tyrosine recombinase XerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (303 amino acids)

>IAI46_00725 tyrosine recombinase XerC (Serratia liquefaciens MT49)
MTPLAASLQQPVDAFLRYLKVERQLSPLTQLSYSRQLQALMALAQDMGITEWPALDAAKV
RMLAARSKRAGLQSSSLALRLSALRSFLDWQVSQGMLIANPAKGIRTPRSGRHLPKNIDV
DEMNQLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDLAAGEIWVLGKGSKE
RKLPVGRTAVTWLEHWLAMRDLFGPSDDAMFLSNQGKRISTRNVQKRFAEWGVKQGVNSH
IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLANVYDAAHPRAKR
GKS