Protein Info for HUW76_10715 in Fusobacterium nucleatum SB010

Annotation: DUF554 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 229 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 31 to 49 (19 residues), see Phobius details amino acids 55 to 73 (19 residues), see Phobius details amino acids 102 to 123 (22 residues), see Phobius details amino acids 143 to 173 (31 residues), see Phobius details amino acids 185 to 206 (22 residues), see Phobius details amino acids 212 to 228 (17 residues), see Phobius details PF04474: DUF554" amino acids 1 to 226 (226 residues), 249.1 bits, see alignment E=1.7e-78

Best Hits

KEGG orthology group: K07150, (no description) (inferred from 59% identity to lba:Lebu_1870)

Predicted SEED Role

"Transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (229 amino acids)

>HUW76_10715 DUF554 domain-containing protein (Fusobacterium nucleatum SB010)
MGLITNFLSIIIGGILGLTIGKKFNEDIKNIIVDCAGIFIMVIGIKSALVAEKDIMILIY
LIIGAVIGQIINIDKRIKDFSQFLENKFVKEKNSLNNEKSFAKGFSTATILYCVGAMAIL
GSINSGLTNDNTILNIKAILDGVISIVLTSIYGIGVIFSAISVTLYQGIFYLFASQIKDY
LNPQAISELNAVGGVLVLAIGINMTFKKDIKTANMLPAIFIPLLVSIFA