Protein Info for HUW76_09980 in Fusobacterium nucleatum SB010

Annotation: AbgT family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 514 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 85 to 105 (21 residues), see Phobius details amino acids 125 to 155 (31 residues), see Phobius details amino acids 165 to 189 (25 residues), see Phobius details amino acids 209 to 229 (21 residues), see Phobius details amino acids 269 to 287 (19 residues), see Phobius details amino acids 306 to 329 (24 residues), see Phobius details amino acids 349 to 369 (21 residues), see Phobius details amino acids 389 to 409 (21 residues), see Phobius details amino acids 416 to 434 (19 residues), see Phobius details amino acids 446 to 465 (20 residues), see Phobius details amino acids 477 to 502 (26 residues), see Phobius details PF03806: ABG_transport" amino acids 9 to 511 (503 residues), 476.1 bits, see alignment E=1e-146 PF03606: DcuC" amino acids 246 to 495 (250 residues), 28.5 bits, see alignment E=6.1e-11

Best Hits

KEGG orthology group: K12942, aminobenzoyl-glutamate transport protein (inferred from 41% identity to amt:Amet_0146)

Predicted SEED Role

"Aminobenzoyl-glutamate transport protein" in subsystem p-Aminobenzoyl-Glutamate Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (514 amino acids)

>HUW76_09980 AbgT family transporter (Fusobacterium nucleatum SB010)
MNERKGIMGKIIAVSNRLPHPVTIFIIFSIIVGILSVIFSKMGVSVEIEAINRSTKQVEL
QTYSVKSLFDADGIRWIFEEAVPNFIGFAPLGVVLFFSLFFNFLNEVGLFPSFLKKSMQK
IKGKYMSLFIAFLGVNSSFAGDIGYVLVIPIAGILYKQLKRNPIAGILLGFSSTSAGFAA
CLVSIDALLGGLSTSAMSIVNPNYIVTPLANSIFMFFYTFFITFIIAYVNDKFIEPKVNQ
YFPEELVDNSDIEDNFTELTNDENKGLKYAGIGFLVSIGIILLLSVPSGAPLRNPETGLL
LLGWSPLLSAIIPVICLIFFIPGIFYGIATKKIKNDKDLMTLLFKSLDGFGAFIVLCFFS
SIFISWFSYSQLGIIIAAKGGQFLSEIGLTRIPLMIVFILFCSFINLFIGSMSSKYVLIA
PIFLPMLYKMGVSPELSQLAYRLGDSATNIISPLMSFFPLVLIYCNKYNKKFGFGDLLAY
MMPHAIVILITSIIFFGIWLLFNLPIGFNTVNFF