Protein Info for HUW76_08225 in Fusobacterium nucleatum SB010

Annotation: YfcC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 80 to 105 (26 residues), see Phobius details amino acids 118 to 136 (19 residues), see Phobius details amino acids 143 to 166 (24 residues), see Phobius details amino acids 173 to 196 (24 residues), see Phobius details amino acids 202 to 220 (19 residues), see Phobius details amino acids 257 to 276 (20 residues), see Phobius details amino acids 284 to 303 (20 residues), see Phobius details amino acids 315 to 333 (19 residues), see Phobius details amino acids 348 to 374 (27 residues), see Phobius details amino acids 380 to 398 (19 residues), see Phobius details amino acids 413 to 432 (20 residues), see Phobius details amino acids 443 to 463 (21 residues), see Phobius details PF03806: ABG_transport" amino acids 9 to 423 (415 residues), 35.9 bits, see alignment E=2.8e-13 PF03606: DcuC" amino acids 11 to 459 (449 residues), 334 bits, see alignment E=1.3e-103

Best Hits

KEGG orthology group: None (inferred from 55% identity to aar:Acear_1936)

Predicted SEED Role

"Arginine/ornithine antiporter ArcD" in subsystem Arginine Deiminase Pathway or Arginine and Ornithine Degradation or Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (466 amino acids)

>HUW76_08225 YfcC family protein (Fusobacterium nucleatum SB010)
MKFKKIKWKAPDAIVLIFILLIISSILTYVIPAGQYDRYIDNAIGREMVNPESYHSVENS
PISLWSLLMSIPKGLEQSASIINFLFIIGGAFNILQSTGAIDAFINKCVKKLQGRERLII
PFFLIFWALGGSILGNFEECLAFIPMQIMLCLALGFDSIVGLALGLCGVCVGYMGAIMNA
FTIGIAQQIAGLPIYSGMGFRLITWSVMLIAAIIYIWNYAGKIKKDPTKSLMYHEDLNSK
FREQKIKDVNFKKEHKLVLFIFLIGIIIIIFGVIKYEFYITEMSAVFVGLSIIMGLVGGL
KLNGTVEAFIQGCHNLLYACICVGIARALTIVMTDGKMLDVIVHFATYLLNGLPNLIKAP
SMFIVQSIINILIPSGSGQAVVTMPIMIPIADVIGITRQTAVLAFQMGDGITNLFTPTSA
SLMAGLAIAGVSWGKWMRWFGKLFLLWIIIGIIACMIATSINYGPF