Protein Info for HUW76_07660 in Fusobacterium nucleatum SB010

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1004 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 331 to 350 (20 residues), see Phobius details amino acids 357 to 377 (21 residues), see Phobius details amino acids 383 to 408 (26 residues), see Phobius details amino acids 428 to 448 (21 residues), see Phobius details amino acids 460 to 483 (24 residues), see Phobius details amino acids 521 to 539 (19 residues), see Phobius details amino acids 841 to 857 (17 residues), see Phobius details amino acids 864 to 887 (24 residues), see Phobius details amino acids 893 to 917 (25 residues), see Phobius details amino acids 937 to 958 (22 residues), see Phobius details amino acids 970 to 996 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 996 (993 residues), 731.5 bits, see alignment E=1.5e-223 PF03176: MMPL" amino acids 835 to 991 (157 residues), 37.6 bits, see alignment E=1.3e-13

Best Hits

KEGG orthology group: None (inferred from 99% identity to fnu:FN0474)

Predicted SEED Role

"Acriflavin resistance protein B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1004 amino acids)

>HUW76_07660 efflux RND transporter permease subunit (Fusobacterium nucleatum SB010)
MKLIKIAIKRTIVTTMISISLLILGIFAMKSMRTELLPDIEYPVVKIITHWSGASAEDVE
KQITNKIERILPNVEGIENISSESSYENSSISVEFNYGVNIQDKVTEIQREVFQIKNDLP
NSAKNPIIKKTEVGAGAITLFLTFVSPDKKALFSYLENYVKPNLETISGVAEVSILGGTK
KQLQIQIEPAKLASYNLTPMDIYQLIRKSSMVIPLGSLMNGREEYVIQALGELESVEEYE
NILLHSNGDTLRLKDIANVVLTEEDPLNLGFNRGKPATTIAISKSSDGSTIEINEKIMKA
IRNMEETMPSNITYFKIFDSSESIKKSINTVGKSALQGLILASLFLWIFFKNKKMTLIVS
FAFPLAISTTFILMKGIHSTFNLISLMGLAIGVGMLTDNSVVVIDNIYNHIQEEKNSIEA
AFIGTNQVFSSVLASTLTSIIVFLPIIFTKGIFKEMFQDMVWAIIFSNVAALLVSVTFIP
MLASKFMKKNIIQTEGKYFSKIQRKYQKFLSISLKHKKKTVLISLLFAFLIFGIGGKFVK
FGFLTKQDYGYYSVIAEFQNGSDFEKIQELRNEIETIIKKEPHTKSYFSIIQKRNGTISV
NVDVGFKEKRKESIFEIVKKVRKEVEKIPDIRTTFFYEYAKGKPKKDIEFQIVGTDLEAI
QILARQIYKDVLKIKGVADVSSTLDSGGKKLEIIFKRDKIQSLNMSIKQIEETISYYLLG
GDRANTITIKSGNEEIEVLVRLSKDNRKSIKQLENLKIKVTDNSFINLSEIADIRKVENQ
LSIDKINRFYSVSIYVNDGGIGTRKIQQELVKIFSEKNKDSSIQYRWGGDAEKMQRAMKE
LMLTFLIAIFLIYALLASQFESFLFPFLVMGSIPFSLVGVIIGFLITQHTLDAVAMVGIV
LLIGIVVNNAIVLLDFIQQEEEESKNKKEAIEKACNLRLRPILLTSLTTIVGMIPLSLRI
GDGSEVYQGLGISIIFGMSFSTLLTLIFVPTTYYMLTSIFSKKL