Protein Info for HUW76_05370 in Fusobacterium nucleatum SB010

Annotation: TIGR03915 family putative DNA repair protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 243 TIGR03915: probable DNA metabolism protein" amino acids 4 to 241 (238 residues), 234.7 bits, see alignment E=6.6e-74 PF13566: DUF4130" amino acids 83 to 241 (159 residues), 151.3 bits, see alignment E=1e-48

Best Hits

KEGG orthology group: None (inferred from 83% identity to fnu:FN0953)

Predicted SEED Role

"Domain often clustered or fused with uracil-DNA glycosylase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (243 amino acids)

>HUW76_05370 TIGR03915 family putative DNA repair protein (Fusobacterium nucleatum SB010)
MPNYYYDGSFDGLLTVIFIAYKDRKNNELRIIVKTGQLLLGLDDINVITNFSKARRVEKA
ICDKLSQNFLNNIQTCFLSCDKNKDIVIVHTVYKALKQGKEILNSLDEHAFYVNKLVKQV
LNERHRYLGVLRFKEVKDGTMFSTIEPKNNVLPILLSHFINRMKREKFAIYDKKRKIIAY
YDTKKVEIFFVKSLEIEWSDEEIEYSELWKTFHKSISIKERENKKLQQSNLPKYYWKHLI
EDM